Articles based on Copy Number Variations
1)Copy Number Variation: Methods and Clinical Applications (2021)
https://www.mdpi.com/2076-3417/11/2/819
2)Comparative study of whole exome sequencing-based copy number variation detection tools (2020)
https://pubmed.ncbi.nlm.nih.gov/32138645/
3) An accurate and powerful method for copy
number variation detection (2019)
https://academic.oup.com/bioinformatics/article/35/17/2891/5288773
4)CONDEL: detecting copy number variation and genotyping deletion Zygosity from single tumor samples using sequence data (2018)
IEEE/ACM Trans Comput Biol Bioinformatics. 2018. 10.1109/TCBB.2018.2883333
5)CNV-CH: A Convex Hull Based Segmentation Approach to Detect Copy Number Variations (CNV) Using Next-Generation Sequencing Data
(2015)
https://www.sanger.ac.uk/tool/cosmic/
Articles based on Next Generation Sequencing
1)An Overview of Next-Generation Sequencing (2021)
https://www.technologynetworks.com/genomics/articles/an-overview-of-next-generation-sequencing-346532
2) Massive parallel sequencing in forensics: advantages, issues, technicalities, and prospects (2020)
https://pubmed.ncbi.nlm.nih.gov/32451905/
3)Massively parallel sequencing techniques for forensics: A review (2018)
https://analyticalsciencejournals.onlinelibrary.wiley.com/doi/full/10.1002/elps.201800082
4)A Model for Distributed Processing and Analyses of NGS Data under Map-Reduce Paradigm (2018)
https://ieeexplore.ieee.org/document/8319972
5)Next-generation sequencing revolution through big data analytics (2016)
http://www.tandfonline.com/loi/tfls20
Articles based on mapabbility bias and GC bias
1)Summarizing and correcting the GC content bias in high-throughput sequencing (2012)
https://academic.oup.com/nar/article/40/10/e72/2411059
2)Modeling and correct the GC bias of tumor and normal WGS (2018)
https://bmcbioinformatics.biomedcentral.com
3)Systematic dissection of biases in whole-exome and whole-genome sequencing reveals major determinants of coding sequence coverage (2020)
www.nature.com/scientificreports
4)Accounting for GC-content bias reduces systematic errors and batch effects in ChIP-seq data (2017) https://genome.cshlp.org/content/27/11/1930.full
5)Computational Errors and Biases in Short Read Next Generation Sequencing (2017) https://www.longdom.org/open-access/computational-errors-and-biases-in-short-read-next-generationsequencing-jpb-1000420.pdf
Articles based on Cancer Biomarkers
1)IMPORTANT DIAGNOSTIC METHODS OF CANCER BIOMARKERS RELATED DIAGNOSIS
AND TREATMENT: A REVIEW (2020)
http://www.jcreview.com/fulltext/197-1587012503.pdf
2)Current Update of Laboratory Molecular Diagnostics Advancement in Management of Colorectal Cancer (CRC) (2020)
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7168209/
3)FDA approval summary: Pembrolizumab for the treatment of microsatellite instability-high solid tumors (2019)
https://clincancerres.aacrjournals.org/content/25/13/3753
4) GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries ( 2018)
https://acsjournals.onlinelibrary.wiley.com/doi/10.3322/caac.21492
5)The adjuvant treatment of stage III colon cancer: Might less be more? (2018)
https://www.cancernetwork.com/view/adjuvant-treatment-stage-iii-colon-cancer-might-less-be-more